Should I scrap it or keep with it or what.....Imput always desired, and LOAF I trust you to give an honest opinion so rip into me if you want
My feeling is basically that no story ever benefits from a 'super ship'.
The desire to create them is very, very strong... but they don't make a very good setting. Once you've established that your characters have an amazing super-battleship that slices, dices and sautees everything in the galaxy... what's the point?
Wing Commander 2 and Wing Commander Prophecy both run afowl of this - you start off with an amazing ship, so where do you go? Aren't the really compelling stories the one with the underdog characters on spit-and-glue ships facing a superior enemy? The Tigers Claw with her drippy ceiling, the Intrepid with her lack-of-a-bridge, the Victory. When you boil it down, giving your ship amazing technology is not the same as - and can be counter to - having a ship which is an amazing setting
(In defense of WC2, though, it's more the fans deciding in retrospect that the Concordia can do everything... her super gun was originally a little throw away explanation to do away with the 'Sivar' technology from a previous game).
Also, I feel that no story ever benefits from having its author play ship designer. No matter how good your intentions are, no matter how interesting your superdreadnaught seems to you, it will read to everyone else as though you are a dog marking a tree. That's just how fictional shipbuilding seems -- like you're trying to reinvent the universe instead of use it as the rules for your story. The really great tie-in stories are the ones that, well, tie-in. Where we say "Wow, I recognize that ship, and this guy is using it in a really clever way!". Who didn't get tired of the Forstchen novels telling us how great his CVEs were over and over -- and at the same time, wasn't it cool when all the ship designs in False Colors were ones we knew from Wing Commander III?
Finally, the whole 'ignore Prophecy' thing... who is this supposed to appeal to? What's the point of doing that? I honestly don't understand.