I didn't really mess with the ships in Prophecy, but sort of went to town on the ones in Secret Ops. In both games I sometimes replaced a ships 36 dragonflies with six dumbfires. I hated the panther's chain ions, and replaced them with pulse particles. On the Vampire, I replaced the two pulse particles with two cloudbursts and replaced the four tachyon guns with pulse particles.
Besides that, I doubled all the defensive stats of Cerberus' fighters so my wingmen wouldn't constantly eject. Stiletto still manages to get shot down.
Besides that, I doubled all the defensive stats of Cerberus' fighters so my wingmen wouldn't constantly eject. Stiletto still manages to get shot down.



ahh sweet revenge for shooting down all my torps