What if we made a tractor beam gun, and an FMV movie of the tractor beam for each ship with a tractor beam. It could be scripted to play upon firing your tractor beam gun, as long as your within a certain range of the pod. After the movie is completed, we could destroy the pod. The mission would basically halt, show the movie, then continue without the pod. It take a lot of space with that many FMV movies, and I dunno if we can implement the within a certain range thing, or the firing of a gun to trigger a movie, but if that's possible, then this would work. If not possible, then we can just have you fly within a certain range of the pod and stay there for say... 10 seconds (I know we can do this) then show the movie and destroy the pod. I think we could probably implement a tractor beam without too much work.
Then again... I'm just a composer... what do I know?